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# If a clustering results in complete fuzzyness, then the functions returns a warning.#1, 03:26 PM (This post was last modified:, 09:02.# exprs(eset_rma) - 2(exprs(eset_rma) # If needed unlog RMA expression values.# The argument 'type' can be assigned the values "goSlim" or "assigned".# Read 250 Indie Games You Must Play by Mike Rose eBook or Kindle ePUB.# exprs(eset) - log2(exprs(eset) # If eset contains absolute intensity values like MAS5 results, then they should be transformed to log2 (or loge) values for # limma.# Presence-absence matrices: to indentify memberships of items across large numbers of sample sets # setlist - lapply(11:30, function(x) sample(letters, x, replacetrue names(setlist) - paste S seq(alongsetlist sep # Generates a sample data set.# (4.3) Batch Analysis of Many Gene Clusters # BatchResult - GOCluster_Report(CL_dfcl_DF, method"all id_type"gene clsz10, cutoff0.001, gocatsc MF "BP "CC recordSpecGOc GO:0003674 "GO:0008150 "GO:0005575 # The function 'GOCluster_Report' performs the three GO analyses in batch mode: 'GOHyperGAll 'GOHyperGAll_Subset' # or 'GOHyperGAll_Simplify'.# Calculates the number of duplicated entries.# This library is usually not installed by default.# (2.3) Obtain AffyID-to-GeneID mappings when working with AffyIDs # AffyID2GeneID(map # When working with AffyIDs, this function creates a AffyID-to-GeneID mapping data frame using by default the tair # mappings for the Arabidopsis ATH1 chip.